I found a problem when I inserted an inline equation. I made an equation (with subscript letters) by LaTeXIT then copied it as a picture and paste it in "Notes" to be used as inline picture. The font I used for equation is the same size as I used in Ulysses -- main text. After exported as PDF file, it (picture) aligned in vertical bottom line with inline text. It resulted in wider line spacing and misplaced subscript letters because the picture height is about 2 times of normal text due to its subscript letters. Is it possible to set vertical alignment to be "Centre" or "Top" ?
Unfortunately, I can't really reproduce the problem here. Could you maybe contact us at support@the-soulmen.com directly (possibly with a sample project which includes this inline equation)?